Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012508.1 Corchorus olitorius cultivar O-4 contig12541, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12133

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
401--472
27
2.7
27
91
0
117
45
22
13
18
1.84
814--902
39
2.3
39
77
11
101
49
16
14
19
1.80
979--1500
30
17.3
30
87
2
672
47
17
13
21
1.82
979--1489
211
2.4
211
89
1
747
47
17
13
21
1.82
1756--2315
35
16.3
35
73
15
381
41
19
21
18
1.91
1828--2317
35
14.1
36
77
11
432
41
19
21
17
1.90
1845--1989
62
2.3
62
90
2
193
42
17
21
18
1.89
1895--1953
26
2.3
26
90
0
91
40
16
22
20
1.91
1756--2116
98
3.6
96
84
6
382
41
19
21
17
1.90
1921--2317
71
5.6
72
81
6
393
41
18
21
18
1.90
1945--2317
106
3.5
105
81
4
399
41
19
20
17
1.90
11518--11558
21
1.9
22
90
5
66
48
7
19
24
1.74

Tables:   1

The End!