Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001251.1 Corchorus olitorius cultivar O-4 contig01251, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 637

Length: 1062
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.31


Found at i:79 original size:21 final size:21

Alignment explanation


    Indices: 53--102  Score: 75
    Period size: 21  Copynumber: 2.4  Consensus size: 21

         43 AGGGATCGAG

                          *       
         53 CTGGGCGCTGA-GCCTTGTCGC
          1 CTGGGCGCTGAGGCATT-TCGC

                                 
         74 CTGGGCGCTGAGGCATTTCGC
          1 CTGGGCGCTGAGGCATTTCGC

                    
         95 CTGGGCGC
          1 CTGGGCGC

        103 CCAGCGGCAA


Statistics
Matches: 27,  Mismatches: 1, Indels: 2
        0.90            0.03        0.07

Matches are distributed among these distances:
  21   23  0.85
  22    4  0.15

ACGTcount: A:0.06, C:0.32, G:0.40, T:0.22


Consensus pattern (21 bp):   
CTGGGCGCTGAGGCATTTCGC
Done.