Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012510.1 Corchorus olitorius cultivar O-4 contig12543, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11041

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5794--5896
25
4.2
24
63
14
59
33
9
20
36
1.85
5752--5945
72
2.6
72
90
3
298
36
10
19
33
1.87
6360--6400
9
4.6
9
81
0
55
75
9
2
12
1.13
6772--6823
17
2.9
18
88
11
81
75
3
9
11
1.18
6773--6838
16
3.8
17
79
13
55
74
4
9
12
1.21
6836--6895
5
11.6
5
75
19
52
66
15
1
16
1.33
6820--6896
31
2.3
32
78
19
86
68
12
2
15
1.31
6816--6894
41
2.0
39
87
5
113
69
12
2
15
1.29
7466--7615
50
3.0
50
90
0
237
32
16
12
38
1.86
8215--8452
50
4.8
50
97
0
431
30
28
13
27
1.94
8509--8664
50
3.1
50
96
0
285
33
12
26
27
1.92
8509--8689
100
1.8
100
90
2
292
35
11
25
28
1.90
8937--9033
28
3.5
27
82
4
113
20
15
22
41
1.90
9171--9222
25
2.1
25
100
0
104
26
19
13
40
1.88

Tables:   1

The End!