genome.fa.s12516.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012516.1 Corchorus olitorius cultivar O-4 contig12549, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43787

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
138--200	31	2.0	31	96	0	117	47	12	14	25	1.79
323--424	27	3.7	27	88	1	141	37	24	19	18	1.94
18758--19028	60	4.4	62	87	4	388	29	13	33	23	1.93
18984--19073	45	2.0	45	93	0	153	28	11	36	23	1.89
19029--19328	60	5.0	60	91	1	478	29	14	31	25	1.95
18801--19253	228	2.0	225	92	2	755	30	13	32	23	1.93
20925--21434	260	2.0	258	92	1	851	30	15	22	32	1.95
22097--22174	39	2.0	39	97	0	147	41	14	2	42	1.59
22319--22375	26	2.2	25	90	3	87	45	15	17	21	1.85
25033--25098	35	1.9	34	87	3	96	31	19	0	48	1.49
25068--25151	28	3.0	28	84	5	109	26	21	1	51	1.55
25224--25264	20	2.0	21	95	4	75	29	12	0	58	1.34
25244--25437	53	3.7	53	93	2	320	31	20	0	47	1.50
25259--25404	28	5.4	29	71	21	147	32	19	0	47	1.49
25280--25429	25	5.8	25	73	14	124	31	20	0	48	1.49
25464--25557	25	3.6	26	77	7	75	27	20	1	51	1.54
25617--25675	18	3.2	18	95	2	100	30	15	0	54	1.42
25683--25784	25	4.2	26	72	21	103	29	19	0	50	1.55
25659--25763	45	2.3	45	87	6	142	27	20	0	51	1.48
25691--25739	19	2.6	18	75	12	53	28	18	0	53	1.45
25691--25731	19	2.2	19	81	0	55	29	19	0	51	1.47
25678--25817	72	2.0	70	88	5	210	27	18	0	53	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25714--25833	27	4.7	26	74	19	94	25	16	0	56	1.46
25788--25840	28	1.9	27	84	3	70	20	16	3	58	1.54
28113--28154	20	2.1	20	86	0	57	19	19	30	30	1.96
32721--32768	24	2.0	24	100	0	96	20	33	16	29	1.95
36495--36588	22	4.3	22	75	0	80	34	17	10	38	1.84
36495--36639	66	2.2	66	80	1	157	34	18	10	36	1.85
42140--42177	15	2.5	15	91	4	58	60	13	10	15	1.59

Tables:   1

The End!