Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012518.1 Corchorus olitorius cultivar O-4 contig12551, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12577
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.30


Found at i:10944 original size:22 final size:22

Alignment explanation


    Indices: 10913--10956  Score: 63
    Period size: 22  Copynumber: 2.0  Consensus size: 22

      10903 ATAAAAAAAT

                                   
      10913 AATATATTTTTAT-ATTATTAAA
          1 AATATATTTTTATCA-TATTAAA

                 *                
      10935 AATATTTTTTTATCATATTAAA
          1 AATATATTTTTATCATATTAAA

      10957 TGAAAAGTTT


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  22   19  0.95
  23    1  0.05

ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55


Consensus pattern (22 bp):   
AATATATTTTTATCATATTAAA
Done.