Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012525.1 Corchorus olitorius cultivar O-4 contig12558, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 17862
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.28


Found at i:7 original size:2 final size:2

Alignment explanation


    Indices: 1--33  Score: 66
    Period size: 2  Copynumber: 16.5  Consensus size: 2

                                                             
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

         34 TAAAGCAAGA


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   31  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Found at i:13062 original size:5 final size:5

Alignment explanation


    Indices: 13022--13049  Score: 56
    Period size: 5  Copynumber: 5.6  Consensus size: 5

      13012 TACTTTTCTC

                                             
      13022 TTAGT TTAGT TTAGT TTAGT TTAGT TTA
          1 TTAGT TTAGT TTAGT TTAGT TTAGT TTA

      13050 TTATTTTTAT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   23  1.00

ACGTcount: A:0.21, C:0.00, G:0.18, T:0.61


Consensus pattern (5 bp):   
TTAGT
Done.