Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012527.1 Corchorus olitorius cultivar O-4 contig12560, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12998
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34


Found at i:6924 original size:12 final size:12

Alignment explanation


    Indices: 6907--6931  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

       6897 AGGTTCTTCC

                        
       6907 TGGGCGTTTGGT
          1 TGGGCGTTTGGT

                        
       6919 TGGGCGTTTGGT
          1 TGGGCGTTTGGT

             
       6931 T
          1 T

       6932 ACACTTTTTG


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.00, C:0.08, G:0.48, T:0.44


Consensus pattern (12 bp):   
TGGGCGTTTGGT
Done.