Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012529.1 Corchorus olitorius cultivar O-4 contig12562, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31017

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--103
21
4.9
21
93
0
170
28
14
28
29
1.95
4158--4241
35
2.4
35
94
4
143
40
14
16
28
1.88
8927--9060
33
3.9
33
82
11
146
29
16
8
44
1.78
8927--9060
68
2.0
66
82
8
162
29
16
8
44
1.78
9028--9996
36
26.8
36
81
7
972
25
16
11
46
1.80
10121--10284
21
7.8
21
95
1
251
29
17
26
26
1.98
11093--11424
36
9.3
36
86
4
467
22
17
12
47
1.81
11093--11424
108
3.1
107
92
1
549
22
17
12
47
1.81
13378--13410
17
2.1
17
88
11
52
9
12
36
42
1.74
14219--14252
17
1.9
18
88
5
52
44
2
2
50
1.32
14820--14949
65
2.0
65
95
0
233
35
10
13
40
1.79
18997--19022
9
2.9
9
100
0
52
0
0
19
80
0.71
20111--20203
42
2.2
42
84
5
125
26
24
8
39
1.84
20111--20243
42
3.1
42
79
5
117
25
23
10
40
1.86
21378--21426
14
3.5
15
81
10
59
38
10
12
38
1.77
21391--21435
14
3.4
13
82
11
56
37
8
15
37
1.79
23858--24045
50
3.8
50
95
0
331
30
28
12
28
1.93
24101--24384
50
5.6
50
93
2
462
35
11
25
27
1.91
24101--24384
102
2.8
100
92
3
462
35
11
25
27
1.91
24101--24384
152
1.9
153
91
3
468
35
11
25
27
1.91
24805--24934
66
2.0
66
95
0
233
36
10
13
40
1.78
27710--27864
21
7.4
21
89
4
224
27
26
16
29
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29706--29833
33
3.9
34
79
6
131
46
21
6
26
1.75
29721--29847
66
1.9
66
83
3
166
44
23
6
25
1.77

Tables:   1

The End!