Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012531.1 Corchorus olitorius cultivar O-4 contig12564, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45679

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1608--1673
15
4.4
15
86
0
87
15
9
37
37
1.79
1612--1691
30
2.7
30
84
0
88
13
8
37
40
1.76
1648--1685
15
2.5
15
91
0
58
5
7
39
47
1.55
3175--3218
15
2.9
14
86
6
52
31
34
9
25
1.87
3829--3896
33
2.0
34
83
8
86
57
14
5
22
1.59
3987--4018
10
3.0
11
90
9
57
75
9
0
15
1.05
4047--4082
15
2.5
15
90
4
56
69
16
0
13
1.19
6153--6198
21
2.1
23
84
8
60
52
19
23
4
1.64
7362--7434
30
2.4
31
88
2
103
36
20
16
26
1.93
10185--10218
16
2.0
18
88
11
54
64
2
11
20
1.39
13664--13714
25
2.0
25
88
0
75
33
15
21
29
1.94
30939--31007
28
2.5
27
73
19
70
4
20
43
31
1.71
30939--31014
29
2.7
28
78
13
77
5
19
40
34
1.74
38311--38385
27
2.7
29
87
4
109
45
22
13
18
1.84

Tables:   1

The End!