Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012534.1 Corchorus olitorius cultivar O-4 contig12567, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52712

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1189--1228
21
1.9
21
89
0
62
27
17
20
35
1.95
11895--11943
22
2.2
21
82
10
62
55
2
2
40
1.23
11906--11949
22
2.0
22
100
0
88
50
0
4
45
1.22
15055--15122
32
2.1
34
83
10
88
19
22
11
47
1.81
21860--21902
16
2.6
17
88
3
61
51
4
0
44
1.22
28067--28134
32
2.1
34
86
10
97
17
23
13
45
1.84
31463--31495
2
16.5
2
93
0
57
51
0
0
48
1.00
32013--33919
952
2.0
952
94
1
3379
41
15
13
29
1.85
35930--36101
36
4.8
36
78
11
158
30
20
8
40
1.81
36003--36110
35
3.0
35
86
8
130
31
18
8
41
1.80
36542--37145
35
17.0
35
85
4
773
28
16
10
44
1.80
36542--37145
71
8.5
71
86
3
822
28
16
10
44
1.80
41505--41575
26
2.7
27
75
4
72
16
16
26
39
1.91
42077--42127
24
2.1
25
85
3
68
70
5
5
17
1.28
44340--44686
185
1.9
185
96
0
649
41
22
15
20
1.90
46423--46563
76
1.9
75
80
7
169
17
26
29
26
1.98

Tables:   1

The End!