Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012535.1 Corchorus olitorius cultivar O-4 contig12568, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38466

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
317--407
32
2.8
31
81
5
92
6
25
6
61
1.45
655--691
2
18.5
2
100
0
74
51
0
0
48
1.00
7194--7219
2
13.0
2
100
0
52
50
0
0
50
1.00
10888--11030
50
2.9
50
95
0
259
27
9
25
37
1.87
11458--11552
50
1.9
50
93
0
163
28
9
24
37
1.86
12554--12578
11
2.3
11
100
0
50
8
16
8
68
1.38
14314--14408
50
1.9
50
93
0
163
28
10
25
35
1.89
15082--15194
42
2.6
43
86
8
149
30
6
19
44
1.75
22306--22345
21
1.9
21
85
10
55
35
20
32
12
1.90
24262--24457
29
6.7
29
82
6
200
19
14
23
41
1.89
29830--29863
13
2.6
13
100
0
68
5
14
8
70
1.31
33354--33378
8
3.1
8
100
0
50
76
0
12
12
1.04
33762--33818
25
2.3
25
87
0
87
75
12
1
10
1.12
33770--33848
25
3.3
25
78
11
87
75
11
0
12
1.04
33788--33855
20
3.5
20
75
13
72
76
10
0
13
1.02
33760--33867
12
9.4
11
73
19
78
75
11
0
12
1.08
33835--33867
6
5.7
6
85
7
50
75
12
0
12
1.04
33783--33861
17
4.5
17
75
12
61
74
11
0
13
1.07
33783--33847
9
7.2
9
75
11
62
75
10
0
13
1.05
34451--34596
50
2.9
50
86
4
222
32
16
14
36
1.89
34994--35360
80
4.6
80
92
1
546
30
20
12
35
1.91
34994--35444
159
2.8
160
84
6
561
31
20
12
35
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35270--35447
92
2.0
90
87
2
250
30
19
12
37
1.89
35569--36051
69
7.0
69
91
0
750
26
28
16
28
1.97
37303--37442
69
2.0
69
98
0
271
49
5
10
34
1.61

Tables:   1

The End!