Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012536.1 Corchorus olitorius cultivar O-4 contig12569, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116332

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6--50
2
22.5
2
100
0
90
48
0
0
51
1.00
2681--2768
42
2.1
42
91
2
142
34
6
21
37
1.80
6895--6927
2
16.5
2
100
0
66
48
0
0
51
1.00
8819--9280
199
2.3
199
89
2
723
32
13
19
34
1.91
9130--9432
150
2.0
151
89
3
459
33
13
19
33
1.91
10392--10440
25
2.0
24
88
11
73
55
0
4
40
1.19
11374--11403
2
15.5
2
93
6
53
50
0
0
50
1.00
11715--11750
6
6.2
6
96
3
65
0
13
0
86
0.58
12902--13091
100
1.9
99
85
4
265
26
13
11
48
1.75
13196--13232
18
2.1
18
89
0
56
29
0
8
62
1.24
15176--15217
21
2.0
21
90
9
68
38
19
23
19
1.93
20430--20458
15
1.9
15
100
0
58
55
0
27
17
1.42
21000--21033
15
2.3
15
100
0
68
38
5
14
41
1.70
21127--21168
21
2.0
21
90
9
68
21
9
19
50
1.75
21265--21312
22
2.1
23
92
3
80
16
22
6
54
1.65
21482--21559
33
2.4
33
97
0
147
19
30
2
47
1.63
21645--21705
29
2.1
29
96
0
113
29
18
16
36
1.92
22517--22552
12
3.0
12
87
0
54
8
19
50
22
1.74
27110--27142
15
2.2
15
100
0
66
36
6
15
42
1.71
27236--27277
21
2.0
21
90
9
68
21
9
19
50
1.75
27374--27421
22
2.1
23
92
3
80
16
22
6
54
1.65
27610--27710
31
3.3
31
76
8
100
35
11
21
30
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28251--28286
3
12.0
3
100
0
72
66
0
33
0
0.92
44184--44227
1
44.0
1
100
0
88
0
0
0
100
0.00
59669--59725
29
2.0
29
100
0
114
17
17
15
49
1.81
60323--60571
132
1.9
132
89
0
390
32
16
15
36
1.90
67920--67948
14
2.1
14
100
0
58
6
51
0
41
1.28
68671--69240
201
2.8
201
91
1
905
36
15
15
33
1.88
69590--69638
24
2.0
24
96
0
89
40
16
2
40
1.60
70097--70178
27
3.0
27
82
7
103
31
14
25
28
1.95
73607--73766
84
1.9
84
86
0
230
33
16
26
23
1.95
75850--75902
26
2.0
26
92
0
88
18
13
28
39
1.88
77439--77467
13
2.1
14
93
6
51
31
34
6
27
1.83
80170--80217
9
5.4
9
80
12
55
77
0
16
6
0.97
80167--80208
16
2.6
16
84
3
57
78
0
16
4
0.91
81565--81618
27
2.0
27
89
7
83
31
14
24
29
1.95
81599--81641
18
2.4
18
85
14
63
34
9
30
25
1.87
85386--85429
22
2.0
22
86
0
61
27
22
25
25
2.00
90055--90170
45
2.7
45
92
5
195
12
17
7
62
1.53
105449--105515
28
2.4
28
80
7
82
28
20
17
32
1.96
109856--109996
49
2.9
47
82
11
162
27
15
5
51
1.66
110246--110287
17
2.4
18
84
7
52
69
0
2
28
1.01
113333--113480
52
2.9
51
83
7
203
29
13
15
41
1.85
114167--114240
37
2.0
37
100
0
148
24
10
16
48
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
115235--115259
13
1.9
13
100
0
50
92
8
0
0
0.40

Tables:   1

The End!