Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012537.1 Corchorus olitorius cultivar O-4 contig12570, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32356

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6780--6842
5
12.6
5
73
18
51
79
0
6
14
0.92
6775--6838
26
2.5
26
87
7
87
78
0
9
12
0.97
9762--9789
14
2.0
14
100
0
56
28
14
14
42
1.84
12061--12615
22
25.6
22
69
14
194
38
9
15
36
1.79
12061--12615
44
12.8
43
69
15
243
38
9
15
36
1.79
12500--12552
19
2.7
19
82
11
54
49
9
11
30
1.70
12579--12632
22
2.5
22
84
6
65
44
9
16
29
1.79
12971--13000
15
1.9
16
93
6
53
50
0
0
50
1.00
13426--13487
6
10.3
6
82
6
72
45
20
33
0
1.52
13546--13579
9
3.8
9
96
0
59
44
0
41
14
1.45
25284--25327
16
2.7
17
82
10
56
11
13
0
75
1.06
25584--25631
23
2.1
23
100
0
96
58
25
4
12
1.52
26989--27018
15
2.0
15
100
0
60
33
0
20
46
1.51
28780--28816
18
2.0
19
94
5
67
64
10
13
10
1.49
29426--29461
19
1.9
18
88
5
54
33
22
2
41
1.68
29995--30091
26
3.7
26
92
0
158
36
14
15
34
1.88
30055--30127
36
2.0
36
97
0
137
35
10
13
39
1.80
31450--31475
8
3.2
8
100
0
52
34
0
11
53
1.37
31576--31611
19
1.9
18
88
5
54
41
2
22
33
1.68

Tables:   1

The End!