Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012538.1 Corchorus olitorius cultivar O-4 contig12571, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57872

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2825--3046
28
8.0
28
75
8
148
15
26
25
32
1.95
2831--3047
56
3.9
55
81
6
199
15
26
25
33
1.95
3068--3418
29
12.3
29
71
7
216
16
28
28
25
1.97
3138--3420
58
4.9
58
76
10
269
18
31
26
24
1.97
3138--3420
112
2.5
115
81
4
324
18
31
26
24
1.97
3580--3830
28
9.0
28
79
6
215
17
26
27
28
1.98
3696--3858
56
2.9
56
87
3
195
16
27
28
27
1.97
3911--3967
25
2.2
25
84
9
71
10
26
31
31
1.90
3931--3980
26
2.0
25
84
4
64
14
22
28
36
1.92
5917--5948
15
2.1
15
94
0
55
40
0
0
59
0.97
6792--6824
16
2.1
16
88
11
50
6
30
36
27
1.81
15477--15534
27
2.1
27
83
0
71
34
1
32
31
1.68
20597--20624
6
4.7
6
100
0
56
53
28
0
17
1.44
25233--25284
22
2.4
22
83
6
61
40
9
9
40
1.71
26252--26322
7
10.3
7
72
13
58
5
15
1
77
1.02
26256--26291
15
2.6
13
87
12
54
8
13
0
77
0.98
26249--26319
12
6.3
11
72
16
56
5
14
1
78
0.99
27166--27219
23
2.2
25
83
6
67
9
7
12
70
1.33
40656--40702
17
2.6
19
86
13
80
51
12
8
27
1.69
41112--41136
13
1.9
13
100
0
50
20
0
8
72
1.10
41098--41144
22
2.1
22
84
7
60
21
2
6
70
1.20
41676--41741
16
4.1
15
81
13
71
7
25
37
28
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41676--41741
32
2.1
32
83
11
82
7
25
37
28
1.83
42390--43304
444
2.1
430
83
6
1139
29
15
13
41
1.85
48538--48563
13
2.0
13
100
0
52
30
15
23
30
1.95
50714--50738
1
25.0
1
100
0
50
100
0
0
0
0.00
54524--54572
23
2.1
23
96
0
89
34
20
14
30
1.92
54435--54683
137
1.8
138
92
2
421
41
14
15
29
1.86
55321--55353
2
16.5
2
100
0
66
51
0
0
48
1.00
55600--55634
17
2.0
18
88
5
54
42
2
8
45
1.49
57021--57091
30
2.4
30
79
9
83
36
19
14
29
1.91

Tables:   1

The End!