Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012539.1 Corchorus olitorius cultivar O-4 contig12572, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101355

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1198--1237
20
2.0
20
85
9
55
35
5
45
15
1.68
1198--1237
18
2.1
20
86
9
57
35
5
45
15
1.68
2106--2176
35
2.0
35
97
0
133
47
23
5
22
1.72
2375--2418
20
2.2
20
83
0
52
25
13
6
54
1.63
3460--3517
2
30.5
2
83
10
50
46
6
1
44
1.40
5848--5909
30
2.1
30
96
0
115
25
24
4
45
1.73
10836--10877
19
2.3
18
84
8
57
35
2
0
61
1.09
18693--18731
20
1.9
21
84
5
53
46
7
2
43
1.46
18788--18825
20
1.9
20
84
10
51
55
0
5
39
1.23
20207--20272
34
2.0
32
91
5
105
33
43
4
18
1.70
22622--22651
13
2.3
13
94
0
51
76
3
6
13
1.11
24978--25026
25
2.0
25
95
0
89
36
18
32
12
1.88
25596--25654
16
3.7
16
84
6
75
55
1
37
5
1.32
25596--25641
17
2.9
16
90
6
67
58
2
32
6
1.36
27441--27486
20
2.3
20
96
0
83
39
13
15
32
1.85
27896--27948
26
2.1
26
82
10
65
62
7
3
26
1.39
30839--30882
22
2.0
22
95
0
79
34
13
11
40
1.81
34822--34985
82
2.0
82
95
0
292
20
20
12
46
1.83
39911--40092
58
3.1
58
99
0
355
24
12
25
38
1.90
40045--40122
41
1.9
41
91
0
129
28
14
24
33
1.94
41027--41149
58
2.1
58
84
0
165
24
17
17
39
1.91
44706--44744
4
9.8
4
83
10
53
74
0
0
25
0.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47078--47126
20
2.5
20
96
0
89
30
14
38
16
1.88
47597--47621
12
2.1
12
100
0
50
52
32
8
8
1.60
48940--48969
14
2.1
14
100
0
60
53
0
20
26
1.46
49462--49499
18
2.1
18
100
0
76
50
5
31
13
1.63
51066--51121
7
8.4
7
76
7
55
28
8
0
62
1.25
51068--51124
27
2.1
27
84
12
73
28
8
0
63
1.24
51530--51560
15
2.1
15
93
0
53
35
6
3
54
1.42
51682--51728
3
15.7
3
100
0
94
65
0
0
34
0.93
53018--53059
3
14.0
3
100
0
84
33
0
0
66
0.92
57175--57302
46
2.8
45
91
2
220
39
21
6
33
1.78
58375--58478
29
3.8
28
77
10
124
15
16
26
41
1.88
61649--61683
2
17.5
2
100
0
70
48
0
0
51
1.00
65284--65361
27
2.9
26
63
19
61
37
17
34
10
1.84
65568--65596
2
14.5
2
100
0
58
48
0
0
51
1.00
66282--66525
51
4.8
51
96
1
438
38
11
27
22
1.89
66392--66470
23
3.2
23
65
22
61
41
11
26
20
1.86
66840--66926
28
3.1
28
83
3
111
14
20
25
39
1.91
75781--75828
21
2.3
22
82
13
57
6
14
52
27
1.66
78548--78614
35
1.9
35
90
6
109
22
13
8
55
1.66
85156--85260
40
2.6
40
81
4
104
30
16
15
38
1.89
87081--87113
17
2.1
17
88
11
52
9
12
36
42
1.74
88891--88922
16
2.0
16
100
0
64
6
25
6
62
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
89376--89425
16
3.1
16
71
25
50
10
28
18
44
1.81
89399--89462
24
2.7
24
100
0
128
14
28
20
37
1.91
91412--91440
14
2.1
14
100
0
58
65
13
13
6
1.45
93045--93100
24
2.3
24
77
17
62
44
1
23
30
1.63
93030--93077
19
2.5
19
80
12
62
45
2
22
29
1.64
93073--93334
33
7.9
33
71
12
169
51
1
19
28
1.56
93166--93219
17
3.2
17
77
15
67
61
0
20
18
1.35
100061--100090
11
2.7
11
94
0
51
13
33
10
43
1.77
100093--100194
51
2.0
50
85
9
136
21
24
13
40
1.90

Tables:   1

The End!