Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012542.1 Corchorus olitorius cultivar O-4 contig12575, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17538

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2992--3086
42
2.3
42
85
8
124
25
26
9
38
1.86
3033--3314
139
2.0
138
90
0
447
25
21
10
41
1.86
3775--4051
76
3.7
75
94
2
445
36
11
19
32
1.88
4461--4502
15
2.8
15
79
10
50
69
0
19
11
1.19
4876--4900
11
2.3
11
100
0
50
76
8
0
16
1.02
5517--5712
50
3.9
50
91
0
302
33
15
14
36
1.88
6234--6365
50
2.6
50
86
1
183
28
27
14
29
1.95
6383--6687
35
8.7
35
88
4
375
30
18
21
29
1.97
6383--6687
105
2.9
104
87
2
414
30
18
21
29
1.97
16545--16599
27
2.0
27
100
0
110
32
18
18
30
1.95

Tables:   1

The End!