Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012543.1 Corchorus olitorius cultivar O-4 contig12576, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9905
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32


Found at i:1850 original size:16 final size:16

Alignment explanation


    Indices: 1825--1855  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

       1815 TAGATACTTA

                            
       1825 TGATGATTTGCATGAC
          1 TGATGATTTGCATGAC

                 *         
       1841 TGATGCTTTGCATGA
          1 TGATGATTTGCATGA

       1856 ATGCACTTTG


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  16   14  1.00

ACGTcount: A:0.23, C:0.13, G:0.26, T:0.39


Consensus pattern (16 bp):   
TGATGATTTGCATGAC
Done.