Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012544.1 Corchorus olitorius cultivar O-4 contig12577, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6515
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.37


Found at i:4361 original size:2 final size:2

Alignment explanation


    Indices: 4354--4390  Score: 74
    Period size: 2  Copynumber: 18.5  Consensus size: 2

       4344 GTTATAGGCT

                                                                   
       4354 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

       4391 GCAACTATAG


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   35  1.00

ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51


Consensus pattern (2 bp):   
TA

Found at i:5897 original size:13 final size:13

Alignment explanation


    Indices: 5879--5903  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       5869 TTTAATGTTC

                         
       5879 TAAATATTATTTA
          1 TAAATATTATTTA

                        
       5892 TAAATATTATTT
          1 TAAATATTATTT

       5904 GGAATTCCAA


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56


Consensus pattern (13 bp):   
TAAATATTATTTA
Done.