Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012546.1 Corchorus olitorius cultivar O-4 contig12579, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54004

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3535--3664
64
2.0
64
95
0
233
23
16
13
46
1.82
3673--3710
20
1.9
20
100
0
76
23
15
23
36
1.94
10161--10236
36
2.1
36
100
0
152
51
15
2
30
1.57
11886--11910
2
12.5
2
100
0
50
52
0
0
48
1.00
11957--12017
22
2.8
22
94
0
104
39
8
9
42
1.68
12850--12914
28
2.3
27
85
15
80
43
7
1
47
1.41
12993--13047
16
3.5
16
76
11
51
9
18
34
38
1.82
13233--13527
22
13.5
21
70
15
127
37
9
16
36
1.81
13405--13511
45
2.4
44
85
4
135
33
13
14
38
1.85
13638--13688
22
2.5
20
84
12
75
41
5
9
43
1.62
14110--14146
2
18.0
2
94
5
65
48
0
2
48
1.15
14209--14264
22
2.5
22
79
0
58
41
14
8
35
1.77
14551--14641
22
4.1
22
75
2
85
37
16
10
35
1.84
14726--14914
22
8.5
22
73
9
125
36
14
11
37
1.82
17622--17696
24
3.0
24
80
9
71
32
4
17
46
1.66
45471--45503
17
1.9
17
88
11
50
39
0
0
60
0.97
47542--47710
78
2.2
77
88
4
241
51
1
12
34
1.50
49328--49393
22
3.0
22
80
10
82
28
9
18
43
1.80
49339--49431
22
4.2
22
74
8
82
33
7
16
43
1.76
49441--49571
22
5.8
22
77
10
102
41
9
16
32
1.79
49447--49522
27
3.0
27
83
9
90
47
6
14
31
1.70
49438--50288
44
19.3
43
67
16
177
36
8
17
36
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49474--49593
43
2.8
44
79
2
125
39
10
15
35
1.82
49490--49659
65
2.6
66
80
0
180
36
10
17
35
1.84
49622--49685
22
2.9
23
83
6
78
42
6
12
39
1.68
49748--49793
21
2.2
20
80
3
56
36
10
17
34
1.85
49890--50288
22
18.3
21
69
12
180
36
8
16
38
1.79
49955--50024
23
3.1
23
81
6
72
47
2
18
31
1.63
49955--50046
45
2.0
45
83
8
116
45
4
17
32
1.68
50016--50134
63
1.9
63
81
10
145
36
8
15
39
1.77
49999--50157
85
1.9
85
80
7
189
37
7
16
38
1.77
50143--50244
46
2.3
44
82
3
114
34
13
14
37
1.86
50379--50445
22
3.2
20
82
16
73
44
5
8
40
1.60
50416--50453
19
2.0
20
89
5
60
44
7
5
42
1.56

Tables:   1

The End!