Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012551.1 Corchorus olitorius cultivar O-4 contig12584, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15927

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
219--321
2
56.0
2
74
22
93
43
1
0
53
1.18
219--324
21
5.1
20
84
10
133
43
1
0
53
1.18
963--997
13
2.7
13
86
0
52
74
2
5
17
1.14
1366--1394
2
14.5
2
100
0
58
48
0
0
51
1.00
7732--7773
20
2.1
20
86
0
57
19
30
21
28
1.97
9052--9116
25
2.7
24
80
15
73
47
1
0
50
1.10
10590--10627
18
2.2
18
95
4
69
7
10
10
71
1.32
11370--11418
21
2.3
21
83
10
64
18
10
6
65
1.43
12737--12778
22
1.9
22
90
0
66
26
16
19
38
1.92
12767--12863
32
3.0
32
89
3
115
25
23
20
29
1.99
12928--12957
2
15.5
2
93
6
53
53
0
0
46
1.00

Tables:   1

The End!