Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012555.1 Corchorus olitorius cultivar O-4 contig12588, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 16536
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.32


Found at i:487 original size:2 final size:2

Alignment explanation


    Indices: 480--506  Score: 54
    Period size: 2  Copynumber: 13.5  Consensus size: 2

        470 TCTTTAATTA

                                                    
        480 AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT A

        507 ATAAAAATAA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   25  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (2 bp):   
AT

Found at i:14251 original size:17 final size:18

Alignment explanation


    Indices: 14231--14268  Score: 51
    Period size: 18  Copynumber: 2.2  Consensus size: 18

      14221 TTAATTCATT

                              
      14231 TAATTT-CATAAGTTCCA
          1 TAATTTCCATAAGTTCCA

                    *   *     
      14248 TAATTTCCTTAATTTCCA
          1 TAATTTCCATAAGTTCCA

               
      14266 TAA
          1 TAA

      14269 GTAATTTGGG


Statistics
Matches: 18,  Mismatches: 2, Indels: 1
        0.86            0.10        0.05

Matches are distributed among these distances:
  17    6  0.33
  18   12  0.67

ACGTcount: A:0.34, C:0.18, G:0.03, T:0.45


Consensus pattern (18 bp):   
TAATTTCCATAAGTTCCA
Done.