Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012558.1 Corchorus olitorius cultivar O-4 contig12591, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5030

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1018--1060
22
2.0
23
86
9
63
34
11
16
37
1.85
1138--1220
22
3.8
22
74
15
82
40
15
9
33
1.80
1329--1386
23
2.5
23
91
0
89
44
12
5
37
1.64
1329--1559
22
10.7
22
71
14
108
36
17
7
38
1.78
1476--1557
42
1.9
42
87
7
121
41
17
6
35
1.74
1683--1798
44
2.6
46
78
9
116
39
8
14
37
1.77
1683--1781
45
2.2
45
80
8
114
40
9
13
37
1.76
1742--1798
22
2.6
22
88
5
80
38
10
15
35
1.82
1864--1966
22
4.6
22
75
1
80
32
11
18
37
1.87
4654--4747
42
2.1
42
84
9
116
51
12
5
30
1.62
4843--4870
12
2.3
12
100
0
56
60
0
0
39
0.97

Tables:   1

The End!