Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012563.1 Corchorus olitorius cultivar O-4 contig12596, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6159
ACGTcount: A:0.30, C:0.22, G:0.25, T:0.24


Found at i:3814 original size:15 final size:16

Alignment explanation


    Indices: 3790--3829  Score: 55
    Period size: 15  Copynumber: 2.6  Consensus size: 16

       3780 AGAGGTTGAA

                 *          
       3790 AGAAAGCAATTAAAC-
          1 AGAAAACAATTAAACT

                        *   
       3805 AGAAAACAATTATACT
          1 AGAAAACAATTAAACT

                     
       3821 AGAAAACAA
          1 AGAAAACAA

       3830 AGCAAAGTAA


Statistics
Matches: 22,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  15   13  0.59
  16    9  0.41

ACGTcount: A:0.62, C:0.12, G:0.10, T:0.15


Consensus pattern (16 bp):   
AGAAAACAATTAAACT

Done.