Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012564.1 Corchorus olitorius cultivar O-4 contig12597, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 17381
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28


Found at i:3850 original size:11 final size:11

Alignment explanation


    Indices: 3834--3881  Score: 52
    Period size: 11  Copynumber: 4.7  Consensus size: 11

       3824 GAAGTTCGTG

                       
       3834 TTTGAAGACTA
          1 TTTGAAGACTA

                        
       3845 TTTGAAGA-TAA
          1 TTTGAAGACT-A

                       
       3856 TTTGAAGAC--
          1 TTTGAAGACTA

                       
       3865 -TTGAAGACTA
          1 TTTGAAGACTA

                    
       3875 -TTGAAGA
          1 TTTGAAGA

       3882 ATTATTTCAA


Statistics
Matches: 33,  Mismatches: 0, Indels: 9
        0.79            0.00        0.21

Matches are distributed among these distances:
   8    8  0.24
  10    8  0.24
  11   17  0.52

ACGTcount: A:0.40, C:0.06, G:0.21, T:0.33


Consensus pattern (11 bp):   
TTTGAAGACTA

Found at i:17315 original size:13 final size:13

Alignment explanation


    Indices: 17297--17322  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

      17287 CTTGGCATGA

                         
      17297 GTGATGATTTTTG
          1 GTGATGATTTTTG

                         
      17310 GTGATGATTTTTG
          1 GTGATGATTTTTG

      17323 TTGAGATCTT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.15, C:0.00, G:0.31, T:0.54


Consensus pattern (13 bp):   
GTGATGATTTTTG
Done.