Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012567.1 Corchorus olitorius cultivar O-4 contig12600, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54624

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5009--5051
15
2.9
15
86
6
61
44
13
0
41
1.44
11020--11133
60
1.9
60
82
7
142
28
18
15
36
1.92
12042--12325
154
1.8
153
85
3
401
30
13
15
39
1.87
18666--18744
20
4.0
20
85
4
108
36
40
12
10
1.77
18865--18910
24
1.9
24
90
0
74
19
32
8
39
1.82
19392--19439
11
4.7
11
78
21
52
39
6
20
33
1.78
24631--24978
176
2.0
176
95
0
633
26
13
17
42
1.86
26380--26411
11
2.8
12
86
13
50
37
6
18
37
1.76
30605--30794
32
5.7
35
76
13
177
40
16
19
23
1.91
30603--30804
99
2.0
100
87
2
291
41
17
18
22
1.90
30667--30794
67
1.9
68
87
7
190
39
17
19
23
1.93
31900--31965
15
4.5
15
70
11
55
39
7
9
43
1.65
31908--31963
29
1.9
29
82
7
69
35
5
10
48
1.61
31900--31987
44
2.0
44
82
4
106
35
6
12
45
1.69
39016--39079
32
2.0
32
100
0
128
15
53
12
18
1.73
39067--39099
17
1.9
17
100
0
66
18
42
3
36
1.66
47028--47099
33
2.2
33
87
5
101
20
27
20
30
1.98
47051--47117
33
2.0
32
86
11
91
25
23
22
28
1.99
48459--48639
21
8.8
21
77
6
145
30
31
11
26
1.92
50243--50267
2
12.5
2
100
0
50
52
0
0
48
1.00
51044--51083
21
1.9
21
84
0
53
47
2
20
30
1.63
51742--51791
26
1.9
26
88
8
75
50
6
2
42
1.38

Tables:   1

The End!