Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012573.1 Corchorus olitorius cultivar O-4 contig12606, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18063

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
166--219
25
2.2
25
100
0
108
44
7
24
24
1.79
3972--4028
29
2.0
29
82
6
71
43
10
8
36
1.70
11889--11933
22
2.0
23
87
8
67
55
0
4
40
1.20
12258--12382
21
6.0
21
87
1
162
24
16
23
36
1.94
12258--12375
62
1.9
63
87
5
177
25
16
22
35
1.95
12258--12383
41
3.0
41
84
1
162
24
15
23
36
1.94
12903--13051
21
7.1
21
88
3
203
26
13
22
36
1.92
12903--13051
41
3.6
41
87
3
208
26
13
22
36
1.92
12907--13051
62
2.3
63
86
3
195
26
13
22
37
1.91
13076--13127
21
2.5
21
83
0
59
17
15
23
44
1.86
12997--13149
79
1.9
78
85
2
207
26
13
20
39
1.89

Tables:   1

The End!