Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012574.1 Corchorus olitorius cultivar O-4 contig12607, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32637

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
538--588
26
2.0
26
85
11
70
50
1
7
39
1.42
3338--3428
42
2.2
42
90
2
139
35
4
19
40
1.72
4986--5054
31
2.3
30
79
2
75
33
14
23
28
1.94
6333--6407
36
2.1
36
100
0
150
28
14
22
34
1.94
6655--6719
31
2.1
31
88
8
98
38
20
9
32
1.84
13599--13638
18
2.2
18
100
0
80
40
12
20
27
1.88
13922--13965
22
2.0
23
86
4
63
47
15
9
27
1.76
15237--15587
176
2.0
175
91
3
573
52
5
8
33
1.55
15512--15754
122
2.0
121
81
8
289
52
2
9
35
1.46
20986--21447
234
2.0
234
95
0
827
30
17
25
25
1.98
24213--24250
12
3.2
12
81
11
51
60
2
36
0
1.11
26662--26752
30
3.1
30
66
12
89
39
13
23
24
1.90
27468--27509
19
2.2
19
91
0
66
35
28
11
23
1.91

Tables:   1

The End!