Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012575.1 Corchorus olitorius cultivar O-4 contig12608, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44798

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1148--1330
35
5.2
35
85
1
233
19
8
27
43
1.80
5456--5527
36
2.0
36
83
0
90
23
22
25
29
1.99
7092--7152
26
2.3
26
88
5
88
55
8
8
27
1.58
7102--7143
13
3.1
14
73
13
52
54
9
7
28
1.59
8133--8174
22
1.9
22
100
0
84
26
7
19
47
1.74
8294--8397
2
53.5
2
77
5
97
46
2
2
48
1.32
8322--8397
28
2.8
27
88
7
109
44
2
3
48
1.35
11160--11193
6
5.7
6
100
0
68
35
29
0
35
1.58
17110--17213
31
3.4
31
72
15
117
33
22
20
24
1.97
17081--17181
29
3.4
29
69
15
89
32
22
19
24
1.97
17050--17212
60
2.7
60
94
0
272
34
20
19
25
1.96
17252--17359
31
3.6
29
72
14
94
26
19
20
33
1.96
17750--17809
30
2.0
30
90
6
95
30
6
1
61
1.31
17865--17902
14
2.8
14
84
4
51
31
2
0
65
1.06
21382--21484
41
2.5
41
92
1
172
6
13
20
59
1.57
24460--24520
28
2.2
28
100
0
122
40
14
3
40
1.62
25645--26312
69
9.9
68
78
8
528
43
14
19
23
1.87
25667--26312
136
4.8
134
78
6
513
43
14
19
23
1.87
27081--27118
19
2.0
20
89
5
60
52
18
13
15
1.74
27374--27414
17
2.4
17
100
0
82
31
19
9
39
1.84
31480--31527
2
24.5
2
87
4
71
56
0
0
43
0.99
31684--31722
20
2.0
20
89
0
60
38
12
20
28
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38164--38240
28
2.8
27
86
3
109
18
14
23
44
1.86
40303--40348
20
2.5
17
83
13
56
43
6
50
0
1.28
40305--40347
18
2.3
20
84
11
56
44
6
48
0
1.29
42718--42786
34
2.0
34
100
0
138
17
11
21
49
1.78

Tables:   1

The End!