Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012584.1 Corchorus olitorius cultivar O-4 contig12617, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8383
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36


Found at i:6236 original size:15 final size:17

Alignment explanation


    Indices: 6210--6242  Score: 52
    Period size: 16  Copynumber: 2.1  Consensus size: 17

       6200 ACCTACAAAT

                             
       6210 CAAATATACAAA-TAAA
          1 CAAATATACAAATTAAA

                             
       6226 CAAAT-TACAAATTAAA
          1 CAAATATACAAATTAAA

             
       6242 C
          1 C

       6243 TCACATTCCG


Statistics
Matches: 16,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  15    6  0.38
  16   10  0.62

ACGTcount: A:0.64, C:0.15, G:0.00, T:0.21


Consensus pattern (17 bp):   
CAAATATACAAATTAAA

Found at i:7087 original size:23 final size:23

Alignment explanation


    Indices: 7033--7089  Score: 69
    Period size: 23  Copynumber: 2.5  Consensus size: 23

       7023 CCGAGGCAGT

                                   
       7033 CCGAGCCCGAACCCGACCCGAGA
          1 CCGAGCCCGAACCCGACCCGAGA

             *        *     *     *
       7056 CTGAGCCCGATCCCGATCCGAGC
          1 CCGAGCCCGAACCCGACCCGAGA

                *      
       7079 CCGAACCCGAA
          1 CCGAGCCCGAA

       7090 ATAATTTGAA


Statistics
Matches: 27,  Mismatches: 7, Indels: 0
        0.79            0.21        0.00

Matches are distributed among these distances:
  23   27  1.00

ACGTcount: A:0.25, C:0.46, G:0.25, T:0.05


Consensus pattern (23 bp):   
CCGAGCCCGAACCCGACCCGAGA
Done.