Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012586.1 Corchorus olitorius cultivar O-4 contig12619, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2688
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36


Found at i:1298 original size:39 final size:39

Alignment explanation


    Indices: 1255--1337  Score: 107
    Period size: 39  Copynumber: 2.1  Consensus size: 39

       1245 CCGCGCAACA

                                            *        
       1255 GGCCCGCGCGCCTAGCCTGGCGCGCTTGGGCCGTGC-G-CT
          1 GGCCCGCGCGCCT-GCCTGGCGCG-TTGGGCCATGCTGACT

                          *  *                     
       1294 GGCCCGCGCGCCTGGCTTGCGCGTTGGGCCATGCTGACT
          1 GGCCCGCGCGCCTGCCTGGCGCGTTGGGCCATGCTGACT

                 
       1333 GGCCC
          1 GGCCC

       1338 ATTGGCCTTT


Statistics
Matches: 39,  Mismatches: 3, Indels: 4
        0.85            0.07        0.09

Matches are distributed among these distances:
  37   10  0.26
  38    9  0.23
  39   20  0.51

ACGTcount: A:0.04, C:0.40, G:0.40, T:0.17


Consensus pattern (39 bp):   
GGCCCGCGCGCCTGCCTGGCGCGTTGGGCCATGCTGACT
Done.