Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012587.1 Corchorus olitorius cultivar O-4 contig12620, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81195

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5832--5873
15
2.7
15
96
3
75
11
7
14
66
1.43
11243--11284
15
2.7
15
96
3
75
11
7
14
66
1.43
13485--13740
125
2.0
125
96
1
469
31
15
18
34
1.92
17991--18044
19
2.6
21
77
19
60
38
3
18
38
1.69
21706--21775
31
2.3
32
85
11
94
37
18
12
31
1.89
21881--21911
12
2.6
12
100
0
62
58
16
0
25
1.38
30627--30666
19
2.1
19
95
0
71
27
10
22
40
1.86
32791--32829
20
2.0
20
85
10
53
61
5
33
0
1.18
34749--34852
39
2.7
38
82
5
138
48
6
16
28
1.71
35665--35862
105
1.9
104
88
1
297
34
20
16
28
1.94
35665--35865
52
3.8
52
90
1
294
35
19
16
27
1.94
36559--36618
26
2.3
26
86
8
79
48
25
6
20
1.73
40221--40279
2
29.0
2
78
13
50
49
3
3
44
1.36
41103--41165
33
2.0
33
87
6
94
28
30
3
38
1.73
51112--51147
19
1.9
18
88
5
54
41
2
22
33
1.68
61059--61094
19
1.9
18
88
5
54
41
2
22
33
1.68
67058--67120
21
3.0
21
95
0
108
14
1
28
55
1.48
67059--67149
45
2.1
42
84
10
112
10
3
25
60
1.45
76390--76427
13
2.9
13
88
0
58
2
18
0
78
0.86
76391--76427
19
1.9
19
88
0
56
2
16
0
81
0.81
76988--77012
11
2.3
11
100
0
50
84
8
8
0
0.79
77048--77092
20
2.2
20
84
0
54
42
42
8
6
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
77644--77687
18
2.5
17
81
3
52
77
9
9
4
1.12
79418--79564
53
2.8
53
89
6
219
28
17
14
39
1.89
79530--79604
34
2.2
34
79
11
82
25
14
18
41
1.89
80119--80214
38
2.5
39
83
8
124
46
11
16
25
1.80
80188--80260
31
2.4
31
86
2
94
54
17
9
17
1.69
80191--80599
61
7.0
62
77
11
326
45
19
14
20
1.84
80188--80605
30
14.2
30
82
8
384
46
18
14
20
1.84
80415--80479
23
2.8
23
97
0
121
44
24
12
18
1.84
80945--81195
36
7.1
36
90
1
348
44
20
18
16
1.87

Tables:   1

The End!