Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012588.1 Corchorus olitorius cultivar O-4 contig12621, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12004

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--1732
154
11.3
153
89
2
2641
41
18
19
21
1.91
1--1732
461
3.8
460
90
2
2647
41
18
19
21
1.91
3154--3194
21
2.0
21
90
0
64
36
7
26
29
1.83
3751--3790
21
1.9
21
89
0
62
35
20
17
27
1.95
5069--5111
22
2.0
22
90
0
68
20
23
32
23
1.98
5142--5183
21
2.0
21
100
0
84
19
14
38
28
1.90
5069--5239
71
2.3
72
83
8
211
19
22
26
31
1.98
7323--7445
33
3.8
33
77
3
115
43
21
7
27
1.79
8043--8074
15
2.1
15
94
0
55
15
9
28
46
1.77
9569--9611
22
2.0
22
90
0
68
20
23
32
23
1.98
9641--9682
21
2.0
21
100
0
84
19
19
38
23
1.93
9569--9753
71
2.6
71
93
0
316
20
22
27
29
1.98
9712--9754
21
2.0
21
95
0
77
18
23
34
23
1.96
10098--11998
154
12.4
152
86
4
2564
41
17
19
21
1.90

Tables:   1

The End!