Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012589.1 Corchorus olitorius cultivar O-4 contig12622, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52836

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1232--1291
27
2.2
27
82
5
68
25
15
15
45
1.84
3090--3130
19
2.2
19
91
4
66
39
7
31
21
1.81
10266--10296
15
2.1
15
93
0
53
29
25
6
38
1.81
11161--11206
18
2.4
18
85
7
56
43
8
6
41
1.61
11139--11169
2
15.5
2
100
0
62
51
0
0
48
1.00
28991--29066
24
3.2
24
63
26
63
39
11
7
40
1.71
28982--29075
46
2.0
47
95
4
172
38
10
7
43
1.68
35808--35837
8
3.9
8
91
8
53
10
0
0
90
0.47
35799--35841
19
2.3
18
92
4
68
11
0
0
88
0.52
35805--35840
15
2.5
14
91
8
63
8
0
0
91
0.41
35799--35848
26
1.9
26
87
0
73
16
0
0
84
0.63
37259--37286
1
28.0
1
100
0
56
100
0
0
0
0.00
38655--38750
49
2.0
49
93
0
165
32
25
16
26
1.96
38707--38867
84
2.0
79
89
6
241
34
17
9
38
1.83
39620--39716
45
2.2
45
90
1
151
39
21
2
37
1.65
43438--43485
25
1.9
25
100
0
96
33
20
4
41
1.72
45043--45102
19
3.1
19
81
13
68
45
20
5
30
1.72
45366--45394
15
1.9
15
100
0
58
41
3
34
20
1.69
48284--48315
15
2.3
15
89
10
50
50
12
0
37
1.41
50070--50150
39
2.0
40
90
2
128
51
7
2
38
1.43
50141--50187
25
1.9
25
86
4
69
29
6
10
53
1.60
50258--50666
204
2.0
200
95
2
739
36
11
8
44
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51156--51225
36
1.9
36
91
0
113
60
8
10
21
1.55

Tables:   1

The End!