Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001259.1 Corchorus olitorius cultivar O-4 contig01259, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 642

Length: 1071
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.41


Found at i:1021 original size:45 final size:45

Alignment explanation


    Indices: 957--1043  Score: 138
    Period size: 45  Copynumber: 1.9  Consensus size: 45

        947 AGCAACAATT

                                      *                  
        957 AATATTAACTTTATTTTGATGAATTATATAGAGATGGAGTAGTAG
          1 AATATTAACTTTATTTTGATGAATTACATAGAGATGGAGTAGTAG

                   *                   *   *          
       1002 AATATTAGCTTTATTTTGATGAATTACCTAGCGATGGAGTAG
          1 AATATTAACTTTATTTTGATGAATTACATAGAGATGGAGTAG

       1044 AATTTAGGTA


Statistics
Matches: 38,  Mismatches: 4, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  45   38  1.00

ACGTcount: A:0.34, C:0.06, G:0.21, T:0.39


Consensus pattern (45 bp):   
AATATTAACTTTATTTTGATGAATTACATAGAGATGGAGTAGTAG
Done.