Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012591.1 Corchorus olitorius cultivar O-4 contig12624, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31243

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1006--1053
19
2.5
19
96
0
87
12
16
12
58
1.63
1310--1341
16
1.9
17
93
6
57
9
9
0
81
0.88
11091--11486
194
2.0
195
87
2
573
33
18
17
30
1.94
11114--11489
195
1.9
194
88
1
565
34
17
17
31
1.93
14955--15012
30
1.9
30
82
0
71
20
17
24
37
1.93
21114--21167
14
3.8
14
75
4
63
22
18
25
33
1.97
22088--22417
51
6.5
50
89
2
403
24
25
11
38
1.89
22124--22417
51
5.8
51
89
3
434
24
25
11
38
1.89
22343--22419
23
3.2
23
65
20
57
27
27
10
35
1.89
22650--23006
64
5.5
64
87
2
473
27
20
16
35
1.94
22983--23173
68
2.8
68
91
0
303
27
23
11
37
1.89
24180--24239
25
2.4
25
86
5
77
45
15
26
13
1.83
24932--24968
18
2.1
17
90
5
56
67
8
18
5
1.36
27357--27417
32
1.9
32
83
6
79
9
26
49
14
1.75
29627--29679
26
2.0
27
85
3
72
35
9
11
43
1.73
30887--30981
28
3.4
28
91
0
145
20
15
25
38
1.92

Tables:   1

The End!