Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012593.1 Corchorus olitorius cultivar O-4 contig12626, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31342

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1698--1767
34
2.1
34
100
0
140
20
12
14
52
1.73
3508--3649
49
3.0
47
77
12
146
28
16
5
48
1.69
4673--4916
127
1.9
127
94
1
427
28
14
11
45
1.79
5099--5136
19
2.0
19
100
0
76
42
0
15
42
1.47
6596--6844
22
11.2
22
73
9
148
38
16
11
33
1.85
6869--7106
22
10.6
22
65
18
91
33
14
10
41
1.80
6998--7106
44
2.5
43
80
5
110
33
17
11
37
1.85
7879--7918
21
1.9
21
84
0
53
50
7
12
30
1.68
8401--8713
168
1.9
170
80
8
370
30
18
17
32
1.94
8872--8924
22
2.5
22
85
11
74
35
20
9
33
1.85
8997--9046
22
2.2
23
85
3
66
40
24
10
26
1.86
8997--9055
22
2.7
23
79
12
61
37
25
10
27
1.88
9084--9144
22
2.7
23
77
10
63
29
22
3
44
1.69
9187--9308
22
5.5
22
73
14
90
31
12
13
41
1.82
9186--9308
44
2.8
44
84
0
156
31
13
13
41
1.83
9669--9704
18
2.0
18
100
0
72
27
11
11
50
1.72
10084--10146
7
9.4
7
94
3
96
0
0
14
85
0.59
30118--30174
17
3.6
16
84
13
73
8
14
35
42
1.76

Tables:   1

The End!