Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012594.1 Corchorus olitorius cultivar O-4 contig12627, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14826

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
193--266
16
4.6
16
81
6
96
5
13
40
40
1.67
275--315
16
2.5
17
76
15
50
4
14
36
43
1.67
2387--2418
11
2.9
11
95
0
55
50
25
0
25
1.50
5468--5504
18
2.1
18
94
0
65
27
2
35
35
1.71
10092--10293
22
9.1
22
74
5
129
37
19
9
32
1.85
10343--10398
22
2.5
22
79
0
58
35
16
7
41
1.75
10425--10574
22
6.9
22
73
3
117
32
14
10
42
1.80
10419--10588
44
3.9
42
76
10
137
30
17
10
42
1.82
10403--10588
22
8.4
22
69
13
105
30
16
10
42
1.81
10425--10588
66
2.5
65
73
9
145
31
14
10
43
1.80
12774--12815
15
2.7
15
88
3
66
66
11
7
14
1.43

Tables:   1

The End!