Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012595.1 Corchorus olitorius cultivar O-4 contig12628, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48790

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
366--435
36
1.9
36
91
0
113
21
10
8
60
1.55
813--906
45
2.2
43
90
7
147
38
21
6
34
1.79
2882--3283
204
2.0
201
96
1
732
44
8
11
36
1.71
3361--3407
25
1.9
24
95
4
85
55
8
6
29
1.55
3398--3478
39
2.0
40
90
2
128
38
3
7
50
1.48
7289--7337
25
2.0
25
91
0
80
14
34
18
32
1.91
10584--10614
2
15.5
2
100
0
62
48
0
0
51
1.00
11227--11277
24
2.1
25
85
3
68
70
5
5
17
1.28
23115--23194
38
2.1
38
83
0
97
42
32
3
21
1.70
23115--23194
19
4.2
19
77
0
79
42
32
3
21
1.70
29052--29104
14
3.8
14
97
0
97
35
16
39
7
1.78
43965--44292
41
7.8
40
78
11
320
43
26
10
20
1.83
43965--44293
84
3.9
85
89
2
504
43
26
10
20
1.83
45156--45201
25
2.0
24
87
12
69
54
19
8
17
1.68

Tables:   1

The End!