Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012598.1 Corchorus olitorius cultivar O-4 contig12631, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 43916
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32


Found at i:38274 original size:10 final size:10

Alignment explanation


    Indices: 38261--38285  Score: 50
    Period size: 10  Copynumber: 2.5  Consensus size: 10

      38251 TGAATTGATC

                      
      38261 TGAATTTTGG
          1 TGAATTTTGG

                      
      38271 TGAATTTTGG
          1 TGAATTTTGG

                 
      38281 TGAAT
          1 TGAAT

      38286 GTGTATGGTA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   15  1.00

ACGTcount: A:0.24, C:0.00, G:0.28, T:0.48


Consensus pattern (10 bp):   
TGAATTTTGG
Done.