Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000126.1 Corchorus olitorius cultivar O-4 contig00126, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 748

Length: 1247
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.35


Found at i:434 original size:21 final size:20

Alignment explanation


    Indices: 410--449  Score: 62
    Period size: 21  Copynumber: 1.9  Consensus size: 20

        400 TAAATCTAGA

                                 
        410 TTTAATTACTTTGCTTTTTAG
          1 TTTAATTACTTT-CTTTTTAG

                   *           
        431 TTTAATTGCTTTCTTTTTA
          1 TTTAATTACTTTCTTTTTA

        450 ATTGTTATTT


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  20    7  0.39
  21   11  0.61

ACGTcount: A:0.17, C:0.10, G:0.07, T:0.65


Consensus pattern (20 bp):   
TTTAATTACTTTCTTTTTAG
Done.