Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012609.1 Corchorus olitorius cultivar O-4 contig12642, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63002

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
137--221
44
2.0
42
86
8
120
36
22
7
34
1.81
2439--2473
9
3.9
9
100
0
70
22
22
31
22
1.98
3355--3573
111
1.9
115
91
3
365
42
11
8
36
1.73
4627--4660
17
2.0
17
94
0
59
50
0
5
44
1.26
4914--4971
25
2.4
24
85
2
71
62
3
5
29
1.33
5728--5921
107
1.8
108
86
4
277
52
2
10
34
1.48
17471--17651
93
1.9
93
89
2
283
51
2
13
32
1.55
27503--27527
8
3.1
8
100
0
50
48
24
0
28
1.52
37201--37255
24
2.3
24
75
6
58
50
41
0
7
1.30
39201--39408
109
1.9
109
95
0
380
32
20
19
27
1.97
51059--51104
22
2.1
22
91
0
74
39
17
17
26
1.91
51306--51376
19
3.8
18
77
17
65
30
2
5
60
1.34
51304--51376
38
1.9
38
88
5
112
30
2
6
60
1.37
55864--55930
26
2.5
26
83
11
75
59
2
1
35
1.22
55872--55961
20
4.5
20
70
19
71
56
3
3
36
1.32
55918--55958
17
2.3
18
87
4
57
53
2
4
39
1.35
60453--60490
19
2.0
20
94
5
69
84
0
15
0
0.63
60764--60824
27
2.3
26
77
5
68
37
21
9
31
1.86

Tables:   1

The End!