Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001261.1 Corchorus olitorius cultivar O-4 contig01261, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1880
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34


Found at i:946 original size:30 final size:30

Alignment explanation


    Indices: 912--970  Score: 93
    Period size: 30  Copynumber: 2.0  Consensus size: 30

        902 AAGTTTGTGT

                                           
        912 TTGAAGACCATTTGAAGA-TAATTTCAAGAC
          1 TTGAAGACCA-TTGAAGATTAATTTCAAGAC

                               *         
        942 TTGAAGACCATTGAAGATTTATTTCAAGA
          1 TTGAAGACCATTGAAGATTAATTTCAAGA

        971 GGAAGAATTG


Statistics
Matches: 27,  Mismatches: 1, Indels: 2
        0.90            0.03        0.07

Matches are distributed among these distances:
  29    7  0.26
  30   20  0.74

ACGTcount: A:0.39, C:0.12, G:0.17, T:0.32


Consensus pattern (30 bp):   
TTGAAGACCATTGAAGATTAATTTCAAGAC
Done.