Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012611.1 Corchorus olitorius cultivar O-4 contig12644, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79180

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
756--812
30
1.9
30
92
7
98
21
29
19
29
1.97
1756--1827
27
2.6
27
86
2
90
19
13
27
38
1.90
1944--1976
17
1.9
17
93
0
57
18
21
21
39
1.93
2790--2820
14
2.2
14
100
0
62
48
16
22
12
1.80
15270--15311
11
3.8
11
78
9
50
42
33
9
14
1.78
15952--16060
53
2.1
53
92
3
184
40
19
11
29
1.86
16759--16799
11
3.7
11
90
0
64
26
21
14
36
1.93
18025--18075
21
2.4
21
96
0
93
13
37
7
41
1.74
18486--18577
31
3.0
30
79
7
96
48
26
7
17
1.73
19526--19603
30
2.6
30
97
0
147
30
10
16
42
1.82
21474--21503
15
2.0
15
93
0
51
30
0
33
36
1.58
22742--23016
61
4.5
61
92
2
451
37
12
14
34
1.85
22865--22910
23
2.0
22
91
4
74
43
10
13
32
1.78
22927--22971
23
2.0
22
86
4
63
44
11
13
31
1.78
22742--23016
125
2.2
124
92
1
464
37
12
14
34
1.85
29646--29703
30
2.0
30
86
3
82
55
10
12
22
1.66
36343--36386
22
2.0
22
100
0
88
13
36
18
31
1.90
40659--40694
17
2.1
18
90
10
58
52
5
11
30
1.59
41685--42040
178
2.0
178
96
0
658
36
21
12
29
1.91
43515--43552
18
2.1
18
95
0
67
15
34
26
23
1.95
46011--46126
21
5.5
21
91
2
164
28
18
26
26
1.98
46996--47042
26
1.9
24
87
12
69
27
27
4
40
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48592--48696
33
3.2
33
79
2
113
26
7
20
45
1.77
50534--50712
21
8.5
21
91
1
263
28
18
26
25
1.98
54796--54838
21
2.0
21
86
0
59
16
23
25
34
1.95
59094--59183
33
2.7
32
81
6
108
44
24
6
24
1.77
59046--59183
66
2.1
66
81
8
156
42
21
7
28
1.81
60568--60609
15
2.7
15
92
3
66
66
16
7
9
1.42
62585--62631
26
1.9
24
87
12
69
40
4
27
27
1.75
62585--62641
28
2.1
26
81
12
62
43
3
26
26
1.70
63464--63505
21
2.0
21
100
0
84
33
28
19
19
1.96
68337--68418
26
3.0
26
77
19
94
47
8
18
25
1.76
70258--70595
178
1.9
178
86
4
486
33
13
15
36
1.87
73990--74062
37
2.0
37
100
0
146
32
21
6
38
1.80
74215--74263
24
2.0
24
96
0
89
22
24
18
34
1.96
75776--75859
42
2.0
42
97
0
159
42
8
9
39
1.68
76608--76641
11
3.1
11
86
0
50
32
0
14
52
1.42

Tables:   1

The End!