Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012614.1 Corchorus olitorius cultivar O-4 contig12647, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21553

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9435--9470
6
5.8
6
87
6
54
83
2
13
0
0.76
10935--11086
77
2.0
77
92
2
252
24
13
21
40
1.89
14169--14199
15
2.1
15
100
0
62
25
25
12
35
1.92
16750--16805
7
7.6
7
81
15
51
87
10
1
0
0.62
16753--16794
9
4.7
9
82
11
59
88
9
2
0
0.61
16751--16811
11
5.4
11
81
13
70
85
13
1
0
0.68
16750--16800
16
3.1
16
89
10
77
88
9
1
0
0.60
17574--17698
44
2.8
44
82
0
142
41
13
11
33
1.80
17574--17719
22
6.5
22
71
9
89
40
13
14
32
1.84
17743--17800
22
2.6
23
81
13
68
41
3
22
32
1.71
17829--18072
22
11.1
22
74
10
140
31
11
17
38
1.86
18205--18560
168
2.1
169
80
5
393
32
20
16
30
1.95
19814--20377
22
25.4
22
68
13
192
37
11
15
35
1.84

Tables:   1

The End!