Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012615.1 Corchorus olitorius cultivar O-4 contig12648, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62502

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6578--6603
11
2.4
11
100
0
52
50
19
0
30
1.48
7175--7428
132
2.0
128
89
6
390
38
10
1
48
1.47
8364--8611
131
1.9
132
85
5
351
37
10
2
49
1.49
11149--11186
19
2.1
19
90
5
60
42
15
0
42
1.47
19319--19768
225
2.0
225
100
0
900
26
25
15
32
1.95
33065--33089
12
2.1
12
100
0
50
24
16
0
60
1.36
36274--36420
70
2.1
72
92
2
244
40
19
10
29
1.85
41781--41843
33
1.9
33
93
0
108
44
30
7
17
1.77
44869--44898
5
6.0
5
100
0
60
60
0
0
40
0.97
45310--45344
2
17.5
2
93
0
61
48
2
0
48
1.16
47741--47806
33
2.0
33
87
0
96
31
15
18
34
1.92
48196--48227
15
2.1
15
94
0
55
50
25
9
15
1.74
48866--48894
6
4.8
6
100
0
58
65
0
0
34
0.93
53176--53207
8
4.0
8
100
0
64
0
50
37
12
1.41

Tables:   1

The End!