Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012616.1 Corchorus olitorius cultivar O-4 contig12649, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37777

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2086--2136
24
2.1
24
81
0
57
23
11
21
43
1.85
14868--14937
15
4.6
15
94
1
122
67
11
7
14
1.42
15189--15214
10
2.6
10
100
0
52
34
7
19
38
1.80
23755--23805
20
2.4
22
78
21
63
64
5
5
23
1.38
26423--26480
30
1.9
30
82
6
73
32
17
6
43
1.75
27124--27415
107
2.8
108
85
5
384
40
9
8
41
1.69
27124--27450
107
3.1
104
81
9
353
40
10
7
41
1.68
29389--29547
63
2.5
63
96
1
293
54
8
15
21
1.67
30629--30677
21
2.3
21
86
6
73
42
8
18
30
1.79
30886--30915
2
15.0
2
100
0
60
50
0
0
50
1.00
31262--31302
2
20.5
2
100
0
82
51
0
0
48
1.00
34338--34398
27
2.3
27
82
0
68
31
22
11
34
1.90
36257--36402
32
4.5
32
89
6
215
24
17
23
33
1.96

Tables:   1

The End!