Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012617.1 Corchorus olitorius cultivar O-4 contig12650, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42978

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
242--379
32
4.3
32
97
0
258
29
24
26
18
1.98
3026--3074
22
2.2
22
100
0
98
20
18
22
38
1.93
3033--3080
22
2.2
22
92
0
78
20
20
18
39
1.92
5856--5885
11
2.7
11
100
0
60
10
0
0
90
0.47
6900--6963
21
3.1
21
88
2
103
28
25
14
32
1.94
7261--7316
15
3.7
16
77
15
57
42
3
1
51
1.29
7686--7782
27
3.6
27
87
4
117
17
16
25
40
1.90
8263--8306
15
2.8
16
82
6
63
52
6
15
25
1.68
13152--13186
2
18.5
2
88
11
56
51
0
0
48
1.00
13153--13186
13
2.6
13
95
0
59
50
0
0
50
1.00
13152--13186
15
2.3
15
95
0
61
51
0
0
48
1.00
13368--13428
30
2.0
30
96
0
113
34
29
22
13
1.92
16670--17061
112
3.5
111
89
2
570
27
22
17
32
1.96
25840--25891
26
2.0
26
88
0
77
21
17
21
40
1.91
34905--34940
19
1.9
18
88
5
54
41
2
22
33
1.68

Tables:   1

The End!