genome.fa.s12618.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012618.1 Corchorus olitorius cultivar O-4 contig12651, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  146327

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4--75	31	2.3	31	75	17	78	25	4	9	61	1.45
508--559	23	2.3	23	86	0	77	28	48	19	3	1.66
549--633	32	2.7	32	90	0	125	37	36	15	10	1.82
579--632	16	3.4	16	75	10	65	35	40	16	7	1.77
4433--4477	22	2.0	22	91	4	72	64	24	6	4	1.37
4983--5012	12	2.5	12	94	0	51	26	36	0	36	1.57
13172--13343	87	2.0	87	83	1	209	41	17	8	31	1.80
13551--13600	26	2.0	26	92	4	84	62	0	12	26	1.30
15892--16060	22	7.8	22	72	9	123	34	14	10	41	1.79
15939--15995	20	2.7	21	78	8	62	29	12	7	50	1.66
16122--16203	22	3.7	22	77	6	69	36	14	12	36	1.84
16148--16252	45	2.3	45	77	7	106	37	18	8	36	1.81
16148--16263	23	5.2	23	81	2	103	37	18	8	36	1.81
16146--16503	22	16.8	21	68	16	141	36	16	9	37	1.81
16487--16616	56	2.3	56	98	0	251	38	20	9	31	1.84
16599--16992	22	17.9	22	70	15	201	35	16	8	39	1.80
16574--17201	44	14.5	44	68	17	203	35	17	9	37	1.82
16574--16740	88	1.9	87	85	4	228	34	14	10	40	1.81
17005--17202	22	9.0	22	70	13	140	37	18	10	33	1.85
17052--17202	63	2.3	63	85	3	194	36	17	11	34	1.86
18312--18372	27	2.3	26	83	16	72	45	0	8	45	1.33
31157--31231	29	2.6	29	86	2	105	40	16	24	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35832--35923	29	3.1	29	76	11	80	23	26	15	34	1.94
36668--36719	20	2.6	20	81	0	68	11	7	25	55	1.61
37285--37324	17	2.3	18	82	8	55	25	25	20	30	1.99
37292--37325	17	2.0	17	94	0	59	23	20	20	35	1.96
37294--37333	17	2.4	17	86	0	53	27	20	15	37	1.92
38137--38274	69	2.0	69	88	2	206	50	14	13	22	1.77
39085--39111	4	6.8	4	100	0	54	0	22	0	77	0.76
40380--40418	3	13.0	3	100	0	78	66	0	33	0	0.92
50290--50329	18	2.2	18	86	0	53	50	5	32	12	1.62
52671--52696	5	5.2	5	100	0	52	0	38	0	61	0.96
58581--58619	16	2.4	16	87	8	53	5	12	5	76	1.11
58581--58627	22	2.1	23	81	18	55	4	14	4	76	1.09
61200--61426	30	7.9	30	72	14	190	30	48	9	11	1.72
61167--61438	60	4.7	60	85	8	337	31	47	9	11	1.71
61230--61269	21	1.9	21	84	0	53	37	42	10	10	1.72
63575--63612	16	2.3	17	83	16	53	21	10	18	50	1.76
66706--66775	35	2.0	35	97	0	131	15	25	14	44	1.84
73487--73604	39	3.0	39	98	0	227	29	8	10	51	1.65
75589--75846	74	3.4	74	87	6	351	31	20	18	29	1.96
81873--81951	39	2.0	39	95	0	140	31	8	10	49	1.67
83812--83872	32	1.9	32	89	0	95	27	19	4	47	1.70
88463--88521	31	1.9	31	92	0	100	38	11	11	37	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88463--88529	31	2.2	31	88	0	98	40	10	11	37	1.77
89270--89320	2	26.0	2	84	11	61	50	3	0	45	1.20
89276--89331	27	2.1	27	100	0	112	51	7	0	41	1.29
89420--89494	31	2.5	29	84	4	96	40	22	12	25	1.88
89592--89668	31	2.5	31	86	0	100	37	12	14	35	1.84
93407--93448	22	2.0	21	86	9	59	54	4	0	40	1.21
100537--100601	33	2.0	33	100	0	130	38	15	27	18	1.91
107583--107629	25	1.9	24	83	12	60	27	10	14	46	1.78
107816--107876	22	2.6	23	89	10	97	34	11	19	34	1.88
110279--110349	30	2.4	31	92	4	112	28	21	14	36	1.92
116823--116877	17	3.2	17	82	10	67	23	21	18	36	1.95
120134--120164	16	1.9	16	93	0	53	38	29	19	12	1.89
132611--132648	18	2.1	18	95	0	67	44	13	10	31	1.77
145276--145464	22	8.5	22	71	8	114	37	11	14	36	1.82
145571--145718	22	6.8	21	69	13	93	35	10	18	34	1.86
145941--145982	22	1.9	22	85	0	57	38	9	16	35	1.81

Tables:   1

The End!