Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012619.1 Corchorus olitorius cultivar O-4 contig12652, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37431

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5440--5510
21
3.4
21
96
0
124
26
21
25
26
1.99
5798--5832
18
1.9
18
100
0
70
37
17
28
17
1.92
6073--6192
24
5.0
24
98
0
231
42
4
11
41
1.60
6190--6234
12
3.8
12
90
0
54
60
0
4
35
1.17
6262--6305
21
2.1
21
91
0
70
31
13
29
25
1.94
9469--9498
6
5.0
6
91
0
51
3
50
13
33
1.58
14504--14549
10
4.4
11
83
8
51
39
8
21
30
1.84
14597--14636
21
1.9
21
94
0
71
25
37
22
15
1.93
14619--14740
50
2.4
50
94
0
208
32
23
23
19
1.97
14719--14761
22
2.0
22
90
0
68
23
32
23
20
1.98
16891--16999
33
3.3
33
77
7
123
22
9
23
44
1.82
16911--17020
33
3.3
33
78
7
116
24
10
20
44
1.82
19064--19106
21
2.0
21
90
0
68
23
32
23
20
1.98
19136--19177
21
2.0
21
100
0
84
23
38
19
19
1.93
19065--19249
71
2.6
71
93
0
316
29
26
22
21
1.99
20153--20202
25
2.0
25
92
0
82
32
18
10
40
1.83
20987--21064
37
2.1
37
97
0
147
29
12
20
37
1.90
24494--24989
42
11.7
42
85
4
624
18
26
19
35
1.95
24492--24989
127
3.9
127
84
6
641
18
26
19
35
1.95
25004--25854
40
20.9
40
86
4
1066
17
26
20
35
1.95
25004--25854
81
10.4
80
87
4
1066
17
26
20
35
1.95
35121--35212
21
4.4
21
93
2
134
29
18
26
26
1.98

Tables:   1

The End!