genome.fa.s12627.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012627.1 Corchorus olitorius cultivar O-4 contig12660, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60740

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3886--3915	11	2.7	11	94	0	51	40	13	10	36	1.78
15366--15404	20	1.9	21	89	5	62	43	12	30	12	1.81
18012--18111	51	2.0	51	100	0	200	40	10	6	44	1.63
20890--20948	18	3.1	19	90	9	93	37	5	16	40	1.71
23519--23601	29	2.9	29	81	3	87	44	33	9	12	1.74
25553--25584	15	2.1	15	94	0	55	12	28	0	59	1.34
27433--27462	15	2.0	15	93	0	51	20	10	6	63	1.47
29221--29395	37	4.6	37	80	11	194	56	5	18	18	1.61
29272--29395	7	17.3	7	70	11	72	57	4	20	18	1.56
29240--29395	15	10.7	15	71	12	76	56	5	19	18	1.61
29261--29387	21	6.2	22	79	16	157	55	5	19	18	1.62
29362--29448	34	2.3	37	75	22	92	54	4	20	20	1.62
29490--29534	22	2.0	23	91	4	74	48	4	22	24	1.68
29544--29582	9	4.3	9	81	12	53	66	0	17	15	1.25
29615--29676	26	2.3	27	86	10	92	58	1	22	17	1.48
32323--32374	14	3.7	14	78	17	54	44	7	11	36	1.70
32323--32380	28	2.2	26	84	12	73	39	6	13	39	1.72
33058--33114	23	2.6	22	81	10	55	45	7	14	33	1.71
33061--33114	21	2.4	23	82	11	69	48	7	12	31	1.69
34792--34893	31	3.3	31	88	0	141	38	20	18	22	1.94
35629--35659	2	15.5	2	100	0	62	48	0	0	51	1.00
38903--38943	19	2.2	18	86	4	55	14	7	19	58	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38903--38949	18	2.5	19	86	3	60	14	6	21	57	1.60
39326--39388	31	2.1	30	91	5	101	39	6	15	38	1.73
39807--39868	30	2.1	30	93	3	108	40	11	16	32	1.83
39139--40098	485	2.0	484	92	4	1608	35	15	13	35	1.88
40024--40261	125	1.9	123	83	6	309	52	1	12	34	1.47
40863--40928	31	2.1	31	88	2	96	34	13	9	42	1.76
41052--41130	29	2.7	29	84	5	88	41	12	15	30	1.84
41635--41675	15	2.7	15	84	0	55	56	9	17	17	1.67
41616--41798	37	4.8	37	80	12	185	56	5	19	18	1.60
41667--41797	7	18.3	7	72	13	88	58	3	21	16	1.54
41662--41797	21	6.7	21	79	19	146	57	4	21	16	1.57
41767--41865	22	4.7	22	67	20	50	55	4	21	19	1.59
41881--41929	22	2.3	22	85	3	64	44	6	22	26	1.76
41955--42041	36	2.4	37	94	3	158	62	2	13	21	1.43
41976--42057	36	2.2	36	84	8	101	60	4	14	19	1.51
42021--42098	31	2.7	29	78	18	83	67	2	17	11	1.32
42022--42079	31	1.9	30	92	3	98	67	3	18	10	1.35
42021--42089	31	2.3	30	83	13	97	68	2	17	11	1.32
42059--42122	26	2.4	27	87	7	96	59	1	21	17	1.46
42679--42785	40	2.8	38	87	8	137	33	17	14	34	1.90
42689--42823	38	3.5	37	83	8	137	34	17	16	31	1.92
45631--45779	33	4.1	37	75	14	114	40	16	13	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49312--49805	39	12.7	39	94	0	801	32	21	16	28	1.96
58956--59032	33	2.3	33	84	2	100	44	18	12	24	1.85

Tables:   1

The End!